Citrus fruits are a great natural pectin source for home canning, and many “no added pectin” recipes actually add natural citrus pectin in the form of lemon juice. While citrus juice has a good bit of pectin, citrus seeds contain even more natural pectin that’s perfect for making homemade jam without store-bought pectin.
I love the idea of making homemade jams and jellies without having to buy storebought pectin. We sweeten our preserves with home-harvested honey or our own homemade maple syrup and learning to make my own natural pectin has been on my canning bucket list for a while now.
I’ve seen plenty of recipes for extracting pectin from apples, basically making super-concentrated apple jelly. That apple jelly is then added a few cups at a time to other low pectin fruit preserves. It creates a good firm set, but it also adds a lot of apple flavor to the finished jam. Thus far, I’ve avoided it because I prefer the clean taste of storebought pectin since it doesn’t add any flavor what so ever.
I generally make low sugar jams, so my preferred store-bought pectin is Pomona’s Universal Pectin which works wonderfully in low sugar and no sugar recipes. At some point, I looked up how it’s made and learned that it’s a natural citrus-based pectin. That got me thinking…can I make my own natural citrus pectin?
I started doing a bit of research into natural pectins, and learned that citrus fruits are loaded with pectin. Adding lemon juice to “no pectin added” jams actually adds a significant amount of pectin, and while it’s added mostly to increase acidity which makes the jam taste better…it’s actually helping it gel at the same time.
While citrus juice naturally helps jams gel, citrus seeds can be used as a natural pectin replacement. Several sources mention that you can actually see this in action by placing a few lemon seeds in a small amount of water overnight. They say that it’ll be gel by the morning. I tried this, and no luck, it didn’t gel. What does work, however, is simmering the seeds in juice or water to create a pectin concentrate.
Since this test, I’ve made dozens of jellies and jams using citrus seeds as the pectin source. For jellies, simply simmer the seeds in the juice for about 30 minutes, then strain out the seeds and any fruit matter in a jelly bag. Then add sugar and finish the jelly. Thus far, I’ve used this method with success for moderate pectin fruits like chokecherries.

Chokecherry Jelly Made with Citrus Seed Pectin
For low and no pectin fruits/vegetables, there’s also a good method I’d suggest. Start by simmering about 10-15 lemon seeds in about 2 cups of water for about 30 minutes (for every half pint of jam in the finished recipe). The water will reduce to about 1/2 cup. At this point, it should visibly look like it’s gelling. Strain out the lemon seeds and add that mixture to the canning recipe in place of pectin.
I’ve done this for a zucchini jam, made with this pectin along with a small amount of lemon juice and a bit of lemon zest. Keep in mind you’ll need about 10-15 lemon seeds for every pint of finished jam, and adding the lemon juice and a bit of zest also really helps things gel.

Zucchini marmalade made with citrus seed pectin
For chunky jams instead of jellies, adding a sachet of citrus seeds in cheesecloth is an incredibly effective method.
Tie a tablespoon or two of citrus seeds in a bit of cheesecloth and add it directly into the jam pot. As the fruit simmers, the natural citrus pectin will be extracted from the seeds into the jam.
An even better option is to combine the two techniques and place all the jam ingredients together a few hours (or up to 24 hours) ahead of time. If you’re making strawberry jam, for example, add the sugar to the strawberries and then toss a sachet of citrus seeds into the bottom of the bowl. The sugar will extract liquid from the strawberries, and then the citrus seeds will release pectin into this water. After that initial maceration period, place everything into the jam pot and start it simmering.
This is a great natural gelling agent for citrus jams obviously, and it’s what I used when making this kumquat jam.
Often though, jam making doesn’t directly involve a lot of citrus fruit. In that case, it’s best to save up citrus seeds in the freezer throughout the year. In the winter, we make a lot of limoncello (lemon liqueur) for summertime sipping, and I’m now saving the seeds from those lemons for use in my summer jams as well.
Anytime you use a lemon, orange or lime remember to save the seeds and you’ll have a good supply before you know it.
More Ways to Use Citrus
Looking for more ways to preserve with citrus? Here are a few tasty canning recipes, as well as small-batch wine and more…
- Canning Lemons (3 Ways)
- 20+ Ways to Preserve Lemons
- Lemon Wine
- Salt Cured Lemons
- Canning Lemon Curd
- Canning Oranges
Arlene Penlington
Great article! I’m going to use this. Thank you!
Nancy E. Sutton
Well done! I’ll be referring to this article a lot…. thanks for sharing all your research and experience.
Lucille Gasecki
Today I am using kumquat seeds to make pectin for addition to kumquat jam. Using the soaking method foe seeds. Thanks flow awesome ideas, especially about saving citrus seeds over time to use to make pectin.
Ashley Adamant
Wonderful, I’m so happy to hear it!
Elaine
Hi there from Northern BC Canada!
I am so excited to try making cherry (sour) jam using lemon seeds. BUT I just realised that in one place you say 10-15 seeds per finished pint, and in another , 10-15 seeds per finished half-pint. Could you please clarify? I’m doing this tomorrow – our own organic cherries are half-thawed – so I may have to just wing it but for next batch….. Thanks a bunch!
Administrator
How did your cherry jam work out?
Elaine
It’s hard to tell how big your seeds are. They look so different from mine (California organic lemons, avg 4oz) My seeds are very small. I imagine yours are from Florida, which may be irrelevant, but they look so plump and robust! A measure by weight rather than quantity would help, or how many it takes to cover a dime….March just went out like a LION. here….Stay well & eat lots of lemons!!
Erica
Thanks so much for this. I’ve also seen that guava has a lot of pectin. Do you think I could use guava seeds similarly? They are smaller, so I’d have to use a sachet, I guess.
Administrator
I think it would definitely be worth trying. Let us know how it works out for you.
Steve
I found this article when I was searching for a recipe for ‘home made pectin’. I, too, found many recipes for home made pectin with apples and how to can it.
However, I remembered a very old recipe I have for making marmalade. I formerly lived in Dundee, Scotland where marmalade was invented. A friend there shared an old family marmalade recipe that involved boiling the pips (seeds) in water until a gel forms. You then use this gel in your marmalade recipe to help it set. I was amazed at how well this natural pectin worked. The final product is a pleasantly firm jam. I was told that key to perfect marmalade is to use Seville oranges that are abundant in seeds and have a thick skin.
These oranges are hard to come by in most places and have a very short season (I live in Canada). I am going to try and get a few this winter and make marmalade, but also try and extract the pectin, can it and use it next summer. I have an idea that the citrus-based pectin may have a more complimentary flavour for some of my jams and jellies. I have found that the commercially available products like Certo give me a result that is too hard and do not add anything to the flavour profile.
Thanks for this.